%global packname GenomicAlignments %global packver 1.12.1 Name: R-%{packname} Version: %{packver} Release: 1%{?dist} Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{packver}.tar.gz License: Artistic 2.0 URL: http://www.bioconductor.org/packages/release/bioc/html/%{packname}.html Group: Applications/Engineering Summary: Representation and manipulation of short genomic alignments BuildRequires: R-devel >= 3.3.0, tetex-latex, R-methods, R-BiocGenerics >= 0.15.3, R-S4Vectors-devel >= 0.13.13 BuildRequires: R-IRanges-devel >= 2.5.36, R-GenomeInfoDb >= 1.11.5, R-GenomicRanges >= 1.27.19 BuildRequires: R-SummarizedExperiment >= 1.5.3, R-Biostrings >= 2.37.1, R-Rsamtools-devel >= 1.21.4 BuildRequires: R-utils, R-stats, R-BiocParallel Requires: R-core >= 3.3.0 Requires: R-methods, R-BiocGenerics >= 0.15.3, R-S4Vectors >= 0.13.13 Requires: R-IRanges >= 2.5.36, R-GenomeInfoDb >= 1.11.5, R-GenomicRanges >= 1.27.19 Requires: R-SummarizedExperiment >= 1.5.3, R-Biostrings >= 2.37.1, R-Rsamtools >= 1.21.4 Requires: R-utils, R-stats, R-BiocParallel %description Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments. %prep %setup -q -c -n %{packname} %build %install mkdir -p %{buildroot}%{_libdir}/R/library R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) %{__rm} -rf %{buildroot}%{_libdir}/R/library/R.css %check # Too many missing deps # %%{_bindir}/R CMD check %%{packname} %files %dir %{_libdir}/R/library/%{packname} %doc %{_libdir}/R/library/%{packname}/html %{_libdir}/R/library/%{packname}/CITATION %{_libdir}/R/library/%{packname}/DESCRIPTION %{_libdir}/R/library/%{packname}/INDEX %{_libdir}/R/library/%{packname}/NAMESPACE %{_libdir}/R/library/%{packname}/NEWS %{_libdir}/R/library/%{packname}/Meta %{_libdir}/R/library/%{packname}/help %{_libdir}/R/library/%{packname}/doc %{_libdir}/R/library/%{packname}/extdata %{_libdir}/R/library/%{packname}/libs %{_libdir}/R/library/%{packname}/R %{_libdir}/R/library/%{packname}/unitTests %changelog * Wed May 31 2017 Tom Callaway - 1.12.1-1 - initial package